STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64095.1Hypothetical protein; COG0687 Spermidine/putrescine-binding periplasmic protein. (374 aa)    
Predicted Functional Partners:
AFK64099.1
Dehydratase; COG2030 Acyl dehydratase.
 
     0.778
AFK64098.1
L-carnitine dehydratase/bile acid-inducible protein F; COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
     0.775
AFK62117.1
COG2030 Acyl dehydratase.
 
     0.703
AFK61166.1
Dehydratase; COG2030 Acyl dehydratase.
 
     0.639
AFK63196.1
COG3839 ABC-type sugar transport systems, ATPase components.
 
 
 0.635
ugpE
Sn-glycerol-3-phosphate transport system permease; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
 
 0.613
AFK63195.1
Binding-protein-dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
  
 
 0.613
AFK63483.1
Binding-protein dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
  
 
 0.613
AFK63849.1
Binding-protein-dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
  
 
 0.613
AFK64100.1
Regulatory protein IclR; COG1414 Transcriptional regulator.
 
    0.600
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.