STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64106.1COG0583 Transcriptional regulator. (258 aa)    
Predicted Functional Partners:
AFK64105.1
COG1741 Pirin-related protein; Belongs to the pirin family.
 
 
   0.713
AFK63653.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.701
AFK63753.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.620
queC
exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.574
AFK63557.1
COG1741 Pirin-related protein.
  
 
   0.547
AFK61389.1
DNA-binding transcriptional activator GcvA; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.468
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.