STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64154.1FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating). (82 aa)    
Predicted Functional Partners:
AFK64155.1
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
     0.994
AFK64156.1
SnoaL-like domain containing protein.
 
     0.942
glnH-2
Glutamine ABC transporter periplasmic protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
    0.779
AFK64146.1
Cobaltochelatase subunit CobT; COG4547 Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase).
 
     0.767
AFK64152.1
Taurine ABC transporter substrate-binding protein; COG4521 ABC-type taurine transport system, periplasmic component.
 
   
 0.761
AFK64147.1
Cobaltochelatase; COG0714 MoxR-like ATPases.
 
     0.670
AFK64150.1
COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
 
     0.528
tauB
ABC transporter-like protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
     0.517
AFK64148.1
COG1414 Transcriptional regulator.
  
    0.469
AFK62816.1
Diaminobutyrate--2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.417
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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