STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64163.1COG2186 Transcriptional regulators. (276 aa)    
Predicted Functional Partners:
AFK64162.1
Galactonate dehydratase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
 0.793
AFK62726.1
COG2186 Transcriptional regulators.
  
  
 0.782
AFK63678.1
COG2186 Transcriptional regulators.
  
     0.773
AFK63311.1
COG1802 Transcriptional regulators.
  
  
 0.768
AFK63493.1
COG1802 Transcriptional regulators.
  
  
 0.754
AFK64161.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
  
 0.728
AFK61941.1
COG1802 Transcriptional regulators.
  
  
 0.713
AFK63785.1
COG1802 Transcriptional regulators.
  
  
 0.712
AFK60764.1
COG1802 Transcriptional regulators.
  
  
 0.705
AFK64016.1
COG1802 Transcriptional regulators.
  
  
 0.705
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.