STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64250.1COG1414 Transcriptional regulator. (256 aa)    
Predicted Functional Partners:
AFK62561.1
IclR family transcriptional regulator; COG3386 Gluconolactonase.
      0.821
AFK61153.1
COG3386 Gluconolactonase.
      0.806
AFK62176.1
COG1414 Transcriptional regulator.
  
     0.755
AFK60968.1
COG1414 Transcriptional regulator.
  
     0.738
AFK61030.1
COG1414 Transcriptional regulator.
  
     0.683
AFK62811.1
COG1414 Transcriptional regulator.
  
     0.602
AFK64249.1
COG3181 Uncharacterized protein conserved in bacteria.
       0.517
AFK64248.1
COG4529 Uncharacterized protein conserved in bacteria.
       0.465
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.