STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64361.1YesN family response regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (194 aa)    
Predicted Functional Partners:
AFK62500.1
Two-component sensor kinase; COG2202 FOG: PAS/PAC domain.
  
 
 0.737
AFK64108.1
AraC family transcriptional regulator; COG2202 FOG: PAS/PAC domain.
  
  
 0.707
AFK64512.1
His Kinase A phosphoacceptor domain-containing protein 13; COG4252 Predicted transmembrane sensor domain.
  
 
 0.667
AFK63909.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
  
 0.604
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.543
AFK60792.1
COG0642 Signal transduction histidine kinase.
  
 
 0.514
AFK61796.1
HAMP domain-containing protein 16; COG0642 Signal transduction histidine kinase.
  
 
 0.514
AFK62132.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
  
 
 0.514
AFK63045.1
COG0642 Signal transduction histidine kinase.
  
 
 0.514
AFK61508.1
AraC family transcriptional regulator; COG0784 FOG: CheY-like receiver.
 
 
0.453
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.