STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64418.1COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. (56 aa)    
Predicted Functional Partners:
AFK64416.1
Family 1 extracellular solute-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
    0.930
AFK64417.1
COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
     0.910
AFK64415.1
Binding-protein-dependent transport systems inner membrane component; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
     0.903
AFK64414.1
Binding-protein-dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
   
 0.899
AFK64413.1
ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
 
    0.893
AFK64419.1
Aminotransferase; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.462
AFK64411.1
TetR family transcriptional regulator.
       0.419
AFK64412.1
COG1309 Transcriptional regulator.
       0.419
AFK61903.1
Oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.404
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.