STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64421.1COG3741 N-formylglutamate amidohydrolase. (229 aa)    
Predicted Functional Partners:
AFK61799.1
NAD-dependent formate dehydrogenase subunit delta.
  
  
  0.918
hutG
Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
    
 0.908
AFK61801.1
NADH dehydrogenase (quinone); COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
     
  0.900
AFK61802.1
Formate dehydrogenase subunit gamma; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
     
  0.900
AFK61332.1
Isoaspartyl peptidase; COG1446 Asparaginase.
    
  0.806
AFK61341.1
Aspartate racemase family protein 2; COG1794 Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
    
  0.806
putA
Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; COG0506 Proline dehydrogenase.
     
 0.805
AFK60810.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
  0.800
AFK60958.1
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha; COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
     
  0.800
AFK60959.1
Fe-S type hydro-lyase tartrate/fumarate beta region; COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
     
  0.800
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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