STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64438.1COG0640 Predicted transcriptional regulators. (113 aa)    
Predicted Functional Partners:
AFK64439.1
Hypothetical protein.
 
  
 0.945
AFK64029.1
Hypothetical protein.
 
  
 0.575
AFK64224.1
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
  
 0.467
AFK64520.1
3-demethylubiquinone-9 3-methyltransferase; COG2764 Uncharacterized protein conserved in bacteria.
 
    0.441
AFK62079.1
Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase.
  
  
 0.426
AFK63967.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
   
 0.401
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.