STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64448.1COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (594 aa)    
Predicted Functional Partners:
AFK61153.1
COG3386 Gluconolactonase.
 
  
 0.922
AFK61663.1
3-isopropylmalate dehydratase large subunit; COG1048 Aconitase A.
 
  
 0.854
AFK64462.1
COG3734 2-keto-3-deoxy-galactonokinase.
 
  
 0.754
AFK64449.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.670
AFK61045.1
Acetolactate synthase large subunit; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].
  
 0.641
AFK63420.1
COG0059 Ketol-acid reductoisomerase.
 
  
 0.578
AFK63648.1
COG0147 Anthranilate/para-aminobenzoate synthases component I.
  
 
 0.557
AFK63419.1
COG0059 Ketol-acid reductoisomerase.
 
  
 0.553
ilvH
COG0440 Acetolactate synthase, small (regulatory) subunit.
 
 
 0.537
AFK61491.1
COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; Belongs to the TPP enzyme family.
  
 0.523
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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