STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64449.1COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component. (351 aa)    
Predicted Functional Partners:
AFK60890.1
COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 0.965
AFK63535.1
Putative inner membrane protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 0.959
AFK61155.1
COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 0.933
AFK64308.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 0.843
AFK64450.1
COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.828
AFK60891.1
COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.800
AFK63781.1
TRAP C4-dicarboxylate transporter permease DctM; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
   
 0.797
AFK61154.1
Tripartite ATP-independent periplasmic transporter DctQ; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.775
AFK63534.1
Inner membrane transport protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.765
AFK64448.1
COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
  
    0.670
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.