STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64457.1COG2186 Transcriptional regulators. (248 aa)    
Predicted Functional Partners:
AFK63311.1
COG1802 Transcriptional regulators.
  
  
 0.780
AFK61941.1
COG1802 Transcriptional regulators.
  
  
 0.776
AFK64456.1
Ureidoglycolate lyase; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
     
 0.776
AFK61815.1
COG2186 Transcriptional regulators.
  
     0.775
AFK60764.1
COG1802 Transcriptional regulators.
  
  
 0.771
AFK63785.1
COG1802 Transcriptional regulators.
  
  
 0.769
AFK64455.1
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
     
 0.765
AFK64016.1
COG1802 Transcriptional regulators.
  
  
 0.764
AFK62657.1
COG1802 Transcriptional regulators.
  
  
 0.758
AFK64532.1
COG1802 Transcriptional regulators.
  
  
 0.754
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.