STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64478.1COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog. (262 aa)    
Predicted Functional Partners:
AFK64565.1
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
  
 
0.926
putA
Trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; COG0506 Proline dehydrogenase.
  
 
 0.907
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.900
AFK63185.1
Proline iminopeptidase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
     
  0.900
AFK63874.1
Prolyl iminopeptidase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); Belongs to the peptidase S33 family.
     
  0.900
AFK64109.1
COG3938 Proline racemase; Belongs to the proline racemase family.
 
   
 0.590
AFK64480.1
COG1396 Predicted transcriptional regulators.
       0.506
AFK64481.1
ABC transporter-like protein; COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
       0.489
AFK64488.1
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.484
AFK63698.1
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
 0.435
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.