STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64520.13-demethylubiquinone-9 3-methyltransferase; COG2764 Uncharacterized protein conserved in bacteria. (146 aa)    
Predicted Functional Partners:
AFK64522.1
Hypothetical protein; COG3607 Predicted lactoylglutathione lyase.
 
     0.810
AFK60934.1
COG2764 Uncharacterized protein conserved in bacteria.
  
     0.775
AFK60935.1
3-demethylubiquinone-9 3-methyltransferase; COG3865 Uncharacterized protein conserved in bacteria.
 
  
 0.755
AFK64521.1
Hypothetical protein; COG3607 Predicted lactoylglutathione lyase.
       0.732
AFK64519.1
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
    0.666
AFK64438.1
COG0640 Predicted transcriptional regulators.
 
    0.441
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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