STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFK64544.1COG4648 Predicted membrane protein. (85 aa)    
Predicted Functional Partners:
AFK64543.1
Hypothetical protein.
      0.958
AFK64545.1
AMP-binding protein; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
  
 0.956
AFK64538.1
Hypothetical protein.
 
   
 0.943
AFK64542.1
COG0236 Acyl carrier protein.
 
     0.943
AFK64540.1
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.941
AFK64541.1
COG0236 Acyl carrier protein.
 
     0.941
AFK64549.1
Hypothetical protein; COG0824 Predicted thioesterase.
 
     0.902
AFK64546.1
Glycosyl transferase, group 2 family protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
     0.901
AFK64548.1
Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; COG4261 Predicted acyltransferase.
 
     0.900
AFK64547.1
Glycosyl transferase, family 2; COG4261 Predicted acyltransferase.
 
     0.897
Your Current Organism:
Advenella kashmirensis WT001
NCBI taxonomy Id: 1036672
Other names: A. kashmirensis WT001, Advenella kashmirensis str. WT001, Advenella kashmirensis strain WT001, Tetrathiobacter kashmirensis WT001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.