node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A28LD_0085 | A28LD_0641 | A28LD_0085 | A28LD_0641 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | PFAM: YebG protein; uncharacterized protein conserved in bacteria. | 0.532 |
A28LD_0085 | A28LD_1994 | A28LD_0085 | A28LD_1994 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Hypothetical protein. | 0.842 |
A28LD_0085 | dinB | A28LD_0085 | A28LD_2347 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.502 |
A28LD_0085 | lexA | A28LD_0085 | A28LD_1993 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.814 |
A28LD_0085 | recA | A28LD_0085 | A28LD_0746 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.855 |
A28LD_0610 | A28LD_0611 | A28LD_0610 | A28LD_0611 | Hypothetical protein. | PFAM: impB/mucB/samB family. | 0.995 |
A28LD_0610 | dinB | A28LD_0610 | A28LD_2347 | Hypothetical protein. | nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.811 |
A28LD_0610 | lexA | A28LD_0610 | A28LD_1993 | Hypothetical protein. | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.654 |
A28LD_0610 | recA | A28LD_0610 | A28LD_0746 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.541 |
A28LD_0611 | A28LD_0610 | A28LD_0611 | A28LD_0610 | PFAM: impB/mucB/samB family. | Hypothetical protein. | 0.995 |
A28LD_0611 | lexA | A28LD_0611 | A28LD_1993 | PFAM: impB/mucB/samB family. | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.881 |
A28LD_0611 | recA | A28LD_0611 | A28LD_0746 | PFAM: impB/mucB/samB family. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.826 |
A28LD_0641 | A28LD_0085 | A28LD_0641 | A28LD_0085 | PFAM: YebG protein; uncharacterized protein conserved in bacteria. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.532 |
A28LD_0641 | A28LD_1994 | A28LD_0641 | A28LD_1994 | PFAM: YebG protein; uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.777 |
A28LD_0641 | lexA | A28LD_0641 | A28LD_1993 | PFAM: YebG protein; uncharacterized protein conserved in bacteria. | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.743 |
A28LD_0641 | recA | A28LD_0641 | A28LD_0746 | PFAM: YebG protein; uncharacterized protein conserved in bacteria. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.485 |
A28LD_0663 | lexA | A28LD_0663 | A28LD_1993 | Transcriptional regulator; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family. | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.786 |
A28LD_0663 | rpoD | A28LD_0663 | A28LD_1258 | Transcriptional regulator; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family. | RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.934 |
A28LD_1994 | A28LD_0085 | A28LD_1994 | A28LD_0085 | Hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.842 |
A28LD_1994 | A28LD_0641 | A28LD_1994 | A28LD_0641 | Hypothetical protein. | PFAM: YebG protein; uncharacterized protein conserved in bacteria. | 0.777 |