A0A0C2ZRJ9 protein (Scleroderma citrinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0C2ZRJ9

HET domain-containing protein. (290 aa)

Predicted Functional Partners:

A0A0C2ZGE5

0.821

A0A0C3EBZ3

0.794

A0A0C3E579

0.728

A0A0C3DSA6

0.725

A0A0C3A3H2

0.702

A0A0C3DTG1

0.702

A0A0C3D3E2

0.695

A0A0C3D7G5

0.692

A0A0C2YTZ3

0.691

A0A0C3E0F1

0.691

Your Current Organism:

Scleroderma citrinum

NCBI taxonomy Id: 1036808
Other names: S. citrinum Foug A, Scleroderma citrinum Foug A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0C2YTZ3	A0A0C2ZRJ9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	HET domain-containing protein.	0.691
A0A0C2YTZ3	A0A0C3D7G5	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999
A0A0C2YTZ3	A0A0C3DSA6	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.999
A0A0C2YTZ3	A0A0C3E0F1	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.999
A0A0C2YTZ3	A0A0C3E579	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A0C2ZGE5	A0A0C2ZRJ9	WD_REPEATS_REGION domain-containing protein.	HET domain-containing protein.	0.821
A0A0C2ZGE5	A0A0C3A3H2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.985
A0A0C2ZGE5	A0A0C3DTG1	WD_REPEATS_REGION domain-containing protein.	B30.2/SPRY domain-containing protein.	0.985
A0A0C2ZGE5	A0A0C3EBZ3	WD_REPEATS_REGION domain-containing protein.	UBA domain-containing protein.	0.915
A0A0C2ZRJ9	A0A0C2YTZ3	HET domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.691
A0A0C2ZRJ9	A0A0C2ZGE5	HET domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.821
A0A0C2ZRJ9	A0A0C3A3H2	HET domain-containing protein.	Uncharacterized protein.	0.702
A0A0C2ZRJ9	A0A0C3D3E2	HET domain-containing protein.	Uncharacterized protein.	0.695
A0A0C2ZRJ9	A0A0C3D7G5	HET domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.692
A0A0C2ZRJ9	A0A0C3DSA6	HET domain-containing protein.	Uncharacterized protein.	0.725
A0A0C2ZRJ9	A0A0C3DTG1	HET domain-containing protein.	B30.2/SPRY domain-containing protein.	0.702
A0A0C2ZRJ9	A0A0C3E0F1	HET domain-containing protein.	Uncharacterized protein.	0.691
A0A0C2ZRJ9	A0A0C3E579	HET domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.728
A0A0C2ZRJ9	A0A0C3EBZ3	HET domain-containing protein.	UBA domain-containing protein.	0.794
A0A0C3A3H2	A0A0C2ZGE5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.985