Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
all2262 | all2263 | gene:10494291 | gene:10494292 | ORF_ID:all2262; unknown protein. | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | 0.615 |
all2263 | all2262 | gene:10494292 | gene:10494291 | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | ORF_ID:all2262; unknown protein. | 0.615 |
all2263 | atpD | gene:10494292 | gene:10492010 | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | 0.617 |
all2263 | phnD-2 | gene:10494292 | gene:10494258 | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | ABC tranporter, phosphate-binding protein; ORF_ID:all2229; phnD gene product. | 0.474 |
all2263 | psbO | gene:10494292 | gene:10495896 | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | Manganese-stabilzing protein precursor; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII. | 0.480 |
atpD | all2263 | gene:10492010 | gene:10494292 | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | 0.617 |
phnD-2 | all2263 | gene:10494258 | gene:10494292 | ABC tranporter, phosphate-binding protein; ORF_ID:all2229; phnD gene product. | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | 0.474 |
psbO | all2263 | gene:10495896 | gene:10494292 | Manganese-stabilzing protein precursor; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII. | Heat shock protein X; ORF_ID:all2263; Belongs to the peptidase M48B family. | 0.480 |