Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| all0245 | hupA | gene:10492253 | gene:10492709 | ORF_ID:all0245; hypothetical protein. | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.802 |
| all0245 | hypF | gene:10492253 | gene:10492704 | ORF_ID:all0245; hypothetical protein. | Hydrogenase maturation protein; ORF_ID:alr0694; hypF gene product. | 0.723 |
| alr0733 | alr0734 | gene:10492743 | gene:10492744 | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | Urease accessory protein F; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.999 |
| alr0733 | alr0735 | gene:10492743 | gene:10492745 | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.997 |
| alr0733 | hupA | gene:10492743 | gene:10492709 | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.783 |
| alr0733 | hupB | gene:10492743 | gene:10492710 | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | Hydrogenase expression/formation protein; ORF_ID:alr0700; hupB gene product. | 0.889 |
| alr0734 | alr0733 | gene:10492744 | gene:10492743 | Urease accessory protein F; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.999 |
| alr0734 | alr0735 | gene:10492744 | gene:10492745 | Urease accessory protein F; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.999 |
| alr0734 | hupA | gene:10492744 | gene:10492709 | Urease accessory protein F; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.783 |
| alr0734 | hupB | gene:10492744 | gene:10492710 | Urease accessory protein F; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | Hydrogenase expression/formation protein; ORF_ID:alr0700; hupB gene product. | 0.954 |
| alr0735 | alr0733 | gene:10492745 | gene:10492743 | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.997 |
| alr0735 | alr0734 | gene:10492745 | gene:10492744 | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | Urease accessory protein F; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.999 |
| alr0735 | hupA | gene:10492745 | gene:10492709 | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.865 |
| alr0735 | hupC | gene:10492745 | gene:10492705 | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | Hydrogenase expression/formation protein; ORF_ID:asr0695; hypC gene product. | 0.750 |
| alr0735 | hupD | gene:10492745 | gene:10492706 | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | Hydrogenase expression/formation protein; ORF_ID:alr0696; hypD gene product. | 0.741 |
| hupA | all0245 | gene:10492709 | gene:10492253 | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | ORF_ID:all0245; hypothetical protein. | 0.802 |
| hupA | alr0733 | gene:10492709 | gene:10492743 | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.783 |
| hupA | alr0734 | gene:10492709 | gene:10492744 | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Urease accessory protein F; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.783 |
| hupA | alr0735 | gene:10492709 | gene:10492745 | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Urease accessory protein G; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.865 |
| hupA | hupB | gene:10492709 | gene:10492710 | Hydrogenase expression/formation protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Hydrogenase expression/formation protein; ORF_ID:alr0700; hupB gene product. | 0.995 |
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