STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alr3844Ycf48-like protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity. (339 aa)    
Predicted Functional Partners:
psbW
Photosystem II protein W; ORF_ID:all0801; Belongs to the Psb28 family.
  
   
 0.820
psbO
Manganese-stabilzing protein precursor; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII.
  
   
 0.819
all0748
ORF_ID:all0748; hypothetical protein.
  
   
 0.813
psaD
Photosystem I reaction center subunit II; PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center.
  
   
 0.809
psbZ
Photosystem II 11 kD protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
   
 0.809
all0646
Protein Thf1; May be involved in photosynthetic membrane biogenesis.
  
   
 0.794
alr4888
ORF_ID:alr4888; hypothetical protein.
  
     0.768
asl0940
ORF_ID:asl0940; hypothetical protein.
  
     0.765
alr3414
ORF_ID:alr3414; hypothetical protein.
  
     0.765
alr1085
ORF_ID:alr1085; hypothetical protein.
  
     0.764
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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