STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alr1197ORF_ID:alr1197; unknown protein. (258 aa)    
Predicted Functional Partners:
rpl31
50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
     
 0.899
rpl33
50S ribosomal protein L33; ORF_ID:asl4452; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.898
all1162
NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
      
 0.890
rpl28
50S ribosomal protein L28; ORF_ID:asl2630; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.890
cobW
Cobalamin synthesis protein; ORF_ID:all3392; cobW gene product.
     
 0.889
rpl36
50S ribosomal protein L36; ORF_ID:asl4194; Belongs to the bacterial ribosomal protein bL36 family.
      
 0.889
alr5095
7-cyano-7-deazaguanine synthase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
      
 0.887
alr1198
ORF_ID:alr1198; hypothetical protein.
       0.796
exbB
Biopolymer transport protein; ORF_ID:all5047; exbB gene product.
      
 0.727
thrS-2
threonyl-tRNA synthetase; ORF_ID:all4723; Belongs to the class-II aminoacyl-tRNA synthetase family.
      
 0.718
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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