Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
all1737 | all1738 | gene:10493755 | gene:10493756 | ORF_ID:all1737; probable glycosyl transferase. | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | 0.453 |
all1738 | all1737 | gene:10493756 | gene:10493755 | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | ORF_ID:all1737; probable glycosyl transferase. | 0.453 |
all1738 | all3971 | gene:10493756 | gene:10496013 | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | Putative zinc metalloprotease all3971; ORF_ID:all3971; hypothetical protein; Belongs to the peptidase M50B family. | 0.587 |
all1738 | alr2758 | gene:10493756 | gene:10494792 | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | Serine proteinase; ORF_ID:alr2758. | 0.493 |
all1738 | alr4958 | gene:10493756 | gene:10497013 | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | phenylalanyl-tRNA synthetase; ORF_ID:alr4958; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.512 |
all1738 | asl1739 | gene:10493756 | gene:10493757 | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | ORF_ID:asl1739; unknown protein. | 0.416 |
all1738 | nifJ | gene:10493756 | gene:10493930 | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | Pyruvate flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | 0.414 |
all1738 | nifJ-2 | gene:10493756 | gene:10494837 | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | Pyruvate-flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. | 0.414 |
all3971 | all1738 | gene:10496013 | gene:10493756 | Putative zinc metalloprotease all3971; ORF_ID:all3971; hypothetical protein; Belongs to the peptidase M50B family. | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | 0.587 |
alr2758 | all1738 | gene:10494792 | gene:10493756 | Serine proteinase; ORF_ID:alr2758. | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | 0.493 |
alr4958 | all1738 | gene:10497013 | gene:10493756 | phenylalanyl-tRNA synthetase; ORF_ID:alr4958; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | 0.512 |
asl1739 | all1738 | gene:10493757 | gene:10493756 | ORF_ID:asl1739; unknown protein. | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | 0.416 |
nifJ | all1738 | gene:10493930 | gene:10493756 | Pyruvate flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | 0.414 |
nifJ | nifJ-2 | gene:10493930 | gene:10494837 | Pyruvate flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | Pyruvate-flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. | 0.999 |
nifJ-2 | all1738 | gene:10494837 | gene:10493756 | Pyruvate-flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. | Carboxyl-terminal protease; ORF_ID:all1738; Belongs to the peptidase S41A family. | 0.414 |
nifJ-2 | nifJ | gene:10494837 | gene:10493930 | Pyruvate-flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. | Pyruvate flavodoxin dehydrogenase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin. | 0.999 |