STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alr2431ORF_ID:alr2431; hypothetical protein. (144 aa)    
Predicted Functional Partners:
all2545
ORF_ID:all2545; hypothetical protein.
  
     0.774
alr2980
ORF_ID:alr2980; hypothetical protein.
  
     0.772
alr3707
Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Upon overexpression in E.coli with PCB:ferredoxin oxidoreductase, CpeS and either CpcB or PecB permits synthesis of phycocyanin-coupled CpcB or PecB; Belongs to the HY2 family.
  
     0.772
asr2378
ORF_ID:asr2378; hypothetical protein.
  
     0.770
alr0617
Phycocyanobilin lyase CpcS 1; Catalyzes the site-selective attachment of phycocyanobilin (PCB) to 'Cys-82' in CpcB and 'Cys-83' in PecB. Also able to add PCB to ApcA1, ApcA2, ApcB, ApcD and ApcF, but not PecA. In vitro can be made to add phycoerythrobilin, a non-physiological substrate, to its target proteins (using genes from Fremyella diplosiphon PCC 7601). Binds PCB extremely rapidly, followed by a much slower phase of PCB transfer to the apo-acceptor protein. This suggests that the lyase has a chaperone- like function, and may serve to regulate the manner (possibly the conformation [...]
  
     0.759
all4101
ORF_ID:all4101; hypothetical protein; Belongs to the ycf91 family.
  
     0.747
pecB
Phycoerythrocyanin beta chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
  
     0.739
cpcB
Phycocyanin beta chain; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
  
     0.737
asl2354
CAB/ELIP/HLIP-related protein; ORF_ID:asl2354.
  
     0.737
apcF
Phycobilisome core component; A variant beta-allophycocyanin (AP) which forms a complex with ApcE, a phycobilisome terminal emitter that influences energy transfer to photosystem II; Belongs to the phycobiliprotein family.
  
     0.731
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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