STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
all2853UDP-glucose 4-epimerase; ORF_ID:all2853; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (336 aa)    
Predicted Functional Partners:
all3274
UTP-glucose-1-phosphate uridylyltransferase; ORF_ID:all3274.
  
 0.942
alr0658
UDP-glucose dehydrogenase; ORF_ID:alr0658.
  
 
 0.926
all4713
UDP-glucose 4-epimerase; ORF_ID:all4713; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 
0.906
alr1744
Sulfolipid biosynthesis protein; ORF_ID:alr1744.
   
 0.904
all2854
ORF_ID:all2854; similar to exopolysaccharide production protein.
 
   
 0.806
alr3751
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
      
 0.755
rfbB
dTDP-glucose 4-6-dehydratase; ORF_ID:alr0038; rfbB gene product; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
0.493
alr2270
UDP-3-O-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
      
 0.487
alr0099
ORF_ID:alr0099; unknown protein.
      
 0.475
alr0101
ORF_ID:alr0101; unknown protein.
      
 0.475
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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