STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
all3181ORF_ID:all3181; hypothetical protein. (322 aa)    
Predicted Functional Partners:
all3180
ORF_ID:all3180; similar to adenylate cyclase.
 
     0.875
all3179
ORF_ID:all3179; hypothetical protein.
 
     0.832
alr0970
ABC transporter ATP-binding protein; ORF_ID:alr0970.
      
 0.822
alr3303
ORF_ID:alr3303; hypothetical protein.
      
 0.822
cmcC
Bicarbonate transport ATP-binding protein; ORF_ID:alr2879; cmpC gene product.
  
  
 0.789
all2724
Acireductone dioxygenase; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.
      
 0.784
alr4616
ORF_ID:alr4616; similar to ferrochelatase; Belongs to the ferrochelatase family.
      
 0.763
all1651
Transcriptional regulator; ORF_ID:all1651.
      
 0.723
all0047
ORF_ID:all0047; hypothetical protein.
  
     0.676
rfbB-2
dTDP-glucose 4-6-dehydratase; ORF_ID:alr0657; rfbB gene product.
      
 0.660
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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