Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
all2379 | alr2428 | gene:10494409 | gene:10494458 | Two-component hybrid sensor and regulator; ORF_ID:all2379. | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | 0.983 |
all2379 | alr3761 | gene:10494409 | gene:10495803 | Two-component hybrid sensor and regulator; ORF_ID:all2379. | Two-component hybrid sensor and regulator; ORF_ID:alr3761. | 0.982 |
all2379 | alr4010 | gene:10494409 | gene:10496053 | Two-component hybrid sensor and regulator; ORF_ID:all2379. | ORF_ID:alr4010; hypothetical protein. | 0.413 |
all2379 | cyaB2 | gene:10494409 | gene:10493923 | Two-component hybrid sensor and regulator; ORF_ID:all2379. | Adenylate cyclase; ORF_ID:all1904; cyaB2 gene product. | 0.889 |
all2379 | cyaC | gene:10494409 | gene:10497018 | Two-component hybrid sensor and regulator; ORF_ID:all2379. | Adenylate cyclase carring two-component hybrid sensor and regulator domains; ORF_ID:all4963. | 0.975 |
all2379 | rpoB | gene:10494409 | gene:10493610 | Two-component hybrid sensor and regulator; ORF_ID:all2379. | RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.406 |
alr2428 | all2379 | gene:10494458 | gene:10494409 | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | Two-component hybrid sensor and regulator; ORF_ID:all2379. | 0.983 |
alr2428 | alr3761 | gene:10494458 | gene:10495803 | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | Two-component hybrid sensor and regulator; ORF_ID:alr3761. | 0.992 |
alr2428 | alr4010 | gene:10494458 | gene:10496053 | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | ORF_ID:alr4010; hypothetical protein. | 0.484 |
alr2428 | cyaB2 | gene:10494458 | gene:10493923 | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | Adenylate cyclase; ORF_ID:all1904; cyaB2 gene product. | 0.972 |
alr2428 | cyaC | gene:10494458 | gene:10497018 | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | Adenylate cyclase carring two-component hybrid sensor and regulator domains; ORF_ID:all4963. | 0.991 |
alr3761 | all2379 | gene:10495803 | gene:10494409 | Two-component hybrid sensor and regulator; ORF_ID:alr3761. | Two-component hybrid sensor and regulator; ORF_ID:all2379. | 0.982 |
alr3761 | alr2428 | gene:10495803 | gene:10494458 | Two-component hybrid sensor and regulator; ORF_ID:alr3761. | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | 0.992 |
alr3761 | alr4010 | gene:10495803 | gene:10496053 | Two-component hybrid sensor and regulator; ORF_ID:alr3761. | ORF_ID:alr4010; hypothetical protein. | 0.412 |
alr3761 | cyaB2 | gene:10495803 | gene:10493923 | Two-component hybrid sensor and regulator; ORF_ID:alr3761. | Adenylate cyclase; ORF_ID:all1904; cyaB2 gene product. | 0.697 |
alr3761 | cyaC | gene:10495803 | gene:10497018 | Two-component hybrid sensor and regulator; ORF_ID:alr3761. | Adenylate cyclase carring two-component hybrid sensor and regulator domains; ORF_ID:all4963. | 0.991 |
alr4009 | alr4010 | gene:10496052 | gene:10496053 | ORF_ID:alr4009; hypothetical protein. | ORF_ID:alr4010; hypothetical protein. | 0.723 |
alr4009 | alr4011 | gene:10496052 | gene:10496054 | ORF_ID:alr4009; hypothetical protein. | ORF_ID:alr4011; probable oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.526 |
alr4010 | all2379 | gene:10496053 | gene:10494409 | ORF_ID:alr4010; hypothetical protein. | Two-component hybrid sensor and regulator; ORF_ID:all2379. | 0.413 |
alr4010 | alr2428 | gene:10496053 | gene:10494458 | ORF_ID:alr4010; hypothetical protein. | Two-component hybrid sensor and regulator; ORF_ID:alr2428. | 0.484 |
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