STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alr4030ORF_ID:alr4030; unknown protein. (290 aa)    
Predicted Functional Partners:
hoxF
Hydrogenase subunit; ORF_ID:alr0752; hoxF gene product.
 
 
 0.888
alr1410
ORF_ID:alr1410; hypothetical protein.
 
 
 0.862
alr0751
NADH dehydrogenase I chain E; ORF_ID:alr0751.
 
 
 0.837
all0596
ORF_ID:all0596; unknown protein.
 
 
 0.833
alr4029
ORF_ID:alr4029; similar to vitamin B12 transport protein.
 
     0.829
alr4031
Periplasmic-binding protein of ABC transporter; ORF_ID:alr4031.
 
     0.800
alr4033
ATP-binding protein of ferrichrome ABC transporter; ORF_ID:alr4033.
 
     0.726
alr4032
Permease protein of iron(III) ABC transporter; ORF_ID:alr4032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.686
hoxY
Hydrogenase small subunit; ORF_ID:alr0764; hoxY gene product.
   
   0.646
hoxH
Hydrogenase large subunit; ORF_ID:alr0766; hoxH gene product.
   
   0.642
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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