STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alr4394Putative pre-16S rRNA nuclease; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. (148 aa)    
Predicted Functional Partners:
alr4393
ORF_ID:alr4393; hypothetical protein.
 
     0.876
alr4069
ORF_ID:alr4069; hypothetical protein.
 
     0.784
all4499
ORF_ID:all4499; hypothetical protein; Belongs to the OprB family.
  
     0.770
alr0834
Porin; ORF_ID:alr0834; Belongs to the OprB family.
  
     0.768
alr2231
ORF_ID:alr2231; hypothetical protein; Belongs to the OprB family.
  
     0.763
alr2269
ORF_ID:alr2269; chloroplastic outer envelope membrane protein homolog.
  
     0.758
alr4550
ORF_ID:alr4550; hypothetical protein; Belongs to the OprB family.
  
     0.757
alr4741
ORF_ID:alr4741; hypothetical protein; Belongs to the OprB family.
  
     0.729
alr2272
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine o-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
    0.716
alr0075
ORF_ID:alr0075; hypothetical protein.
  
     0.714
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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