Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| all1237 | alr0290 | gene:10493251 | gene:10492298 | ORF_ID:all1237; hypothetical protein. | ORF_ID:alr0290; similar to s-layer associated multidomain endoglucanase. | 0.937 |
| all1237 | alr4448 | gene:10493251 | gene:10496497 | ORF_ID:all1237; hypothetical protein. | Endo-1,4-beta-xylanase; ORF_ID:alr4448. | 0.653 |
| all2843 | alr0051 | gene:10494877 | gene:10492055 | Alkaline phosphatase; ORF_ID:all2843. | IMP dehydrogenase; ORF_ID:alr0051. | 0.475 |
| all2843 | alr0069 | gene:10494877 | gene:10492073 | Alkaline phosphatase; ORF_ID:all2843. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.475 |
| all2843 | alr0169 | gene:10494877 | gene:10492174 | Alkaline phosphatase; ORF_ID:all2843. | Cyclomaltodextrin glucanotransferase; ORF_ID:alr0169. | 0.470 |
| all2843 | alr0880 | gene:10494877 | gene:10492893 | Alkaline phosphatase; ORF_ID:all2843. | ORF_ID:alr0880. | 0.576 |
| all2843 | alr2190 | gene:10494877 | gene:10494219 | Alkaline phosphatase; ORF_ID:all2843. | Alpha-amylase; ORF_ID:alr2190. | 0.491 |
| all2843 | alr4448 | gene:10494877 | gene:10496497 | Alkaline phosphatase; ORF_ID:all2843. | Endo-1,4-beta-xylanase; ORF_ID:alr4448. | 0.475 |
| alr0051 | all2843 | gene:10492055 | gene:10494877 | IMP dehydrogenase; ORF_ID:alr0051. | Alkaline phosphatase; ORF_ID:all2843. | 0.475 |
| alr0051 | alr0069 | gene:10492055 | gene:10492073 | IMP dehydrogenase; ORF_ID:alr0051. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.515 |
| alr0051 | alr0169 | gene:10492055 | gene:10492174 | IMP dehydrogenase; ORF_ID:alr0051. | Cyclomaltodextrin glucanotransferase; ORF_ID:alr0169. | 0.461 |
| alr0051 | alr0880 | gene:10492055 | gene:10492893 | IMP dehydrogenase; ORF_ID:alr0051. | ORF_ID:alr0880. | 0.501 |
| alr0051 | alr2190 | gene:10492055 | gene:10494219 | IMP dehydrogenase; ORF_ID:alr0051. | Alpha-amylase; ORF_ID:alr2190. | 0.482 |
| alr0051 | alr4448 | gene:10492055 | gene:10496497 | IMP dehydrogenase; ORF_ID:alr0051. | Endo-1,4-beta-xylanase; ORF_ID:alr4448. | 0.475 |
| alr0069 | all2843 | gene:10492073 | gene:10494877 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Alkaline phosphatase; ORF_ID:all2843. | 0.475 |
| alr0069 | alr0051 | gene:10492073 | gene:10492055 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | IMP dehydrogenase; ORF_ID:alr0051. | 0.515 |
| alr0069 | alr0169 | gene:10492073 | gene:10492174 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Cyclomaltodextrin glucanotransferase; ORF_ID:alr0169. | 0.454 |
| alr0069 | alr0880 | gene:10492073 | gene:10492893 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | ORF_ID:alr0880. | 0.495 |
| alr0069 | alr2190 | gene:10492073 | gene:10494219 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Alpha-amylase; ORF_ID:alr2190. | 0.475 |
| alr0069 | alr4448 | gene:10492073 | gene:10496497 | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | Endo-1,4-beta-xylanase; ORF_ID:alr4448. | 0.475 |
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