STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alr4455Alr4455 protein; 6-oxocamphor hydrolase; ORF_ID:alr4455. (253 aa)    
Predicted Functional Partners:
alr2678
ORF_ID:alr2678; probable acyl-CoA synthase.
 
 0.987
rpl33
50S ribosomal protein L33; ORF_ID:asl4452; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.962
alr4058
ORF_ID:alr4058; similar to isovaleryl-CoA dehydrogenase.
 
 0.941
all2379
Two-component hybrid sensor and regulator; ORF_ID:all2379.
  
 
 0.939
rps15
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
    
 
 0.936
rps5
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.936
alr1121
Two-component hybrid sensor and regulator; ORF_ID:alr1121.
  
 
 0.934
all1914
Histidine kinase; ORF_ID:all1914; similar to two-component sensor histidine kinase.
   
 
 0.934
all4097
Two-component hybrid sensor and regulator; ORF_ID:all4097.
   
 
 0.934
rps9
30S ribosomal protein S9; ORF_ID:all4187; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.934
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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