STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
all4722ORF_ID:all4722; hypothetical protein. (353 aa)    
Predicted Functional Partners:
thrS-2
threonyl-tRNA synthetase; ORF_ID:all4723; Belongs to the class-II aminoacyl-tRNA synthetase family.
     
 0.943
alr5053
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
      
 0.720
rps14
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.667
all4721
GTP cyclohydrolase I; ORF_ID:all4721.
     
 0.541
leuS
leucyl-tRNA synthetase; ORF_ID:alr3283; leuS gene product; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.477
rpl28
50S ribosomal protein L28; ORF_ID:asl2630; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.459
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions; Belongs to the PPase family.
      
 0.459
all3722
Precorrin-6y-dependent methyltransferase; ORF_ID:all3722.
     
 0.441
all0833
Periplasmic solute binding protein for ABC transport system; ORF_ID:all0833; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.433
all1748
ORF_ID:all1748; putative lipoprotein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.433
Your Current Organism:
Nostoc sp. PCC7120
NCBI taxonomy Id: 103690
Other names: Anabaena sp. (ATCC 27893), Anabaena sp. (PCC 7120), Anabaena sp. DCC D0672, Anabaena sp. PCC 7120, Anabaena sp. SAG 25.82, Anabaena sp. UTEX B 2576, Anabaena variabilis UTCC 387, N. sp. PCC 7120, Nostoc muscorum ISU, Nostoc sp. AKM24, Nostoc sp. ATCC 27347, Nostoc sp. ATCC 72893, Nostoc sp. DSM 107007, Nostoc sp. Ind43, Nostoc sp. PCC 7120, Nostoc sp. SAG 25.82
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