STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNF4E3 ubiquitin-protein ligase RNF4 isoform X1. (309 aa)    
Predicted Functional Partners:
SUMO1
Small ubiquitin-related modifier 1.
   
 
 0.933
PML
Promyelocytic leukemia.
    
 
 0.888
SP1
Transcription factor Sp1 isoform X1.
    
   0.860
UBE2N
Ubiquitin-conjugating enzyme E2 N isoform X1.
   
 0.797
UBE2I
Ubiquitin-conjugating enzyme E2 I.
   
 0.787
UBE2W
Ubiquitin-conjugating enzyme E2 W isoform X1.
    
 0.767
UBC
Polyubiquitin-C.
    
  0.757
AR
Androgen receptor-like.
    
 
 0.751
SUMO2
Small ubiquitin-related modifier 2.
   
 
 0.743
ENSPVIP00000028426
annotation not available
   
 
 0.743
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.