Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMCD1LIM and cysteine-rich domains protein 1 isoform X1. (360 aa)    
Predicted Functional Partners:
GATA6
Transcription factor GATA-6 isoform X1.
    
 0.945
VSTM2B
V-set and transmembrane domain-containing protein 2B.
      
 0.695
HAAO
3-hydroxyanthranilate 3,4-dioxygenase.
      
 0.693
SLC9A1
Solute carrier family 9 (sodium/hydrogen exchanger), member 1.
   
  
 0.681
GATA3
Trans-acting T-cell-specific transcription factor GATA-3 isoform X1.
    
 0.673
GATA5
Transcription factor GATA-5.
    
 0.644
GATA4
Transcription factor GATA-4-like.
    
 0.644
DHRS7C
Dehydrogenase/reductase SDR family member 7C.
      
 0.624
KYNU
Kynureninase.
      
 0.621
MRPS10
28S ribosomal protein S10, mitochondrial.
      
 0.615
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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