STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMCD1LIM and cysteine-rich domains protein 1 isoform X1. (360 aa)    
Predicted Functional Partners:
GATA6
Transcription factor GATA-6 isoform X1.
    
 0.786
USPL1
SUMO-specific isopeptidase USPL1 isoform X1.
    
 0.669
ATP6V0A2
V-type H+-transporting ATPase subunit a.
      
 0.633
GATA5
Transcription factor GATA-5.
    
 0.624
GATA4
Transcription factor GATA-4-like.
    
 0.624
GATA1
GATA binding protein 1.
    
 0.589
VSTM2B
V-set and transmembrane domain-containing protein 2B.
      
 0.585
MRPS10
28S ribosomal protein S10, mitochondrial.
      
 0.558
TAF6L
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L.
      
 0.448
DVL2
Segment polarity protein dishevelled homolog DVL-2.
    
 0.417
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.