TNN protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TNN

Tenascin N. (1069 aa)

Predicted Functional Partners:

ITGA8

0.941

ITGA9

0.941

ITGAV

0.941

ITGB3

0.938

ITGB6

0.938

ITGB1

0.938

SDC1

0.900

SDC4

0.900

ITGA11

0.796

ITGA2

0.796

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ITGA11	ITGAV	ENSPVIP00000009215	ENSPVIP00000032283	Integrin alpha 11.	Integrin alpha V.	0.436
ITGA11	ITGB1	ENSPVIP00000009215	ENSPVIP00000030948	Integrin alpha 11.	Integrin beta-1 isoform X1.	0.928
ITGA11	ITGB3	ENSPVIP00000009215	ENSPVIP00000024952	Integrin alpha 11.	Integrin subunit beta 3.	0.681
ITGA11	ITGB6	ENSPVIP00000009215	ENSPVIP00000029287	Integrin alpha 11.	Integrin beta 6.	0.642
ITGA11	SDC1	ENSPVIP00000009215	ENSPVIP00000006483	Integrin alpha 11.	Syndecan 1.	0.578
ITGA11	TNN	ENSPVIP00000009215	ENSPVIP00000001063	Integrin alpha 11.	Tenascin N.	0.796
ITGA2	ITGAV	ENSPVIP00000011317	ENSPVIP00000032283	Integrin alpha 2.	Integrin alpha V.	0.436
ITGA2	ITGB1	ENSPVIP00000011317	ENSPVIP00000030948	Integrin alpha 2.	Integrin beta-1 isoform X1.	0.969
ITGA2	ITGB3	ENSPVIP00000011317	ENSPVIP00000024952	Integrin alpha 2.	Integrin subunit beta 3.	0.739
ITGA2	ITGB6	ENSPVIP00000011317	ENSPVIP00000029287	Integrin alpha 2.	Integrin beta 6.	0.642
ITGA2	SDC1	ENSPVIP00000011317	ENSPVIP00000006483	Integrin alpha 2.	Syndecan 1.	0.578
ITGA2	TNN	ENSPVIP00000011317	ENSPVIP00000001063	Integrin alpha 2.	Tenascin N.	0.796
ITGA8	ITGA9	ENSPVIP00000019264	ENSPVIP00000020747	Integrin alpha 8.	Integrin alpha 9.	0.522
ITGA8	ITGAV	ENSPVIP00000019264	ENSPVIP00000032283	Integrin alpha 8.	Integrin alpha V.	0.481
ITGA8	ITGB1	ENSPVIP00000019264	ENSPVIP00000030948	Integrin alpha 8.	Integrin beta-1 isoform X1.	0.946
ITGA8	ITGB3	ENSPVIP00000019264	ENSPVIP00000024952	Integrin alpha 8.	Integrin subunit beta 3.	0.978
ITGA8	ITGB6	ENSPVIP00000019264	ENSPVIP00000029287	Integrin alpha 8.	Integrin beta 6.	0.847
ITGA8	TNN	ENSPVIP00000019264	ENSPVIP00000001063	Integrin alpha 8.	Tenascin N.	0.941
ITGA9	ITGA8	ENSPVIP00000020747	ENSPVIP00000019264	Integrin alpha 9.	Integrin alpha 8.	0.522
ITGA9	ITGAV	ENSPVIP00000020747	ENSPVIP00000032283	Integrin alpha 9.	Integrin alpha V.	0.540