STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSPC1Paraspeckle component 1 isoform X1. (551 aa)    
Predicted Functional Partners:
U2AF2
Splicing factor U2AF 65 kDa subunit.
   
 
 0.688
NUDT21
Cleavage and polyadenylation specificity factor subunit 5.
   
 
 0.669
CPSF6
Cleavage and polyadenylation specificity factor subunit 6 isoform X1.
   
 
 0.638
CDC5L
Cell division cycle 5-like protein.
   
 
 0.603
TOP1
DNA topoisomerase I.
   
 
 0.603
RANBP2
RanBP2-like and GRIP domain-containing protein 4 isoform X1.
   
 
 0.568
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 
 0.553
MATR3
Matrin-3 isoform X1.
   
 
 0.538
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.534
CPSF7
Cleavage and polyadenylation specificity factor subunit 6/7.
   
 
 0.519
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.