VIPAS39 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VIPAS39

VPS33B-interacting protein in polarity and apical restriction. (493 aa)

Predicted Functional Partners:

VPS33B

0.987

VPS33A

0.941

VPS16

0.915

VPS39

0.685

ENSPVIP00000005662

0.681

VPS18

0.681

VPS11

0.678

XPNPEP1

0.674

VPS45

0.616

RAB11FIP5

0.612

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPVIP00000005662	VIPAS39	ENSPVIP00000005662	ENSPVIP00000001114	annotation not available	VPS33B-interacting protein in polarity and apical restriction.	0.681
ENSPVIP00000005662	VPS11	ENSPVIP00000005662	ENSPVIP00000012268	annotation not available	Vacuolar protein sorting-associated protein 11 homolog isoform X1.	0.974
ENSPVIP00000005662	VPS16	ENSPVIP00000005662	ENSPVIP00000008954	annotation not available	VPS16 core subunit of CORVET and HOPS complexes.	0.977
ENSPVIP00000005662	VPS33A	ENSPVIP00000005662	ENSPVIP00000016546	annotation not available	Vacuolar protein sorting-associated protein 33A.	0.960
ENSPVIP00000005662	VPS33B	ENSPVIP00000005662	ENSPVIP00000014360	annotation not available	Vacuolar protein sorting-associated protein 33B isoform X1.	0.941
ENSPVIP00000005662	VPS39	ENSPVIP00000005662	ENSPVIP00000025927	annotation not available	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	0.975
ENSPVIP00000005662	VPS45	ENSPVIP00000005662	ENSPVIP00000027011	annotation not available	Vacuolar protein sorting-associated protein 45 isoform X1.	0.756
RAB11FIP5	VIPAS39	ENSPVIP00000003081	ENSPVIP00000001114	RAB11 family interacting protein 5.	VPS33B-interacting protein in polarity and apical restriction.	0.612
RAB11FIP5	VPS45	ENSPVIP00000003081	ENSPVIP00000027011	RAB11 family interacting protein 5.	Vacuolar protein sorting-associated protein 45 isoform X1.	0.563
VIPAS39	ENSPVIP00000005662	ENSPVIP00000001114	ENSPVIP00000005662	VPS33B-interacting protein in polarity and apical restriction.	annotation not available	0.681
VIPAS39	RAB11FIP5	ENSPVIP00000001114	ENSPVIP00000003081	VPS33B-interacting protein in polarity and apical restriction.	RAB11 family interacting protein 5.	0.612
VIPAS39	VPS11	ENSPVIP00000001114	ENSPVIP00000012268	VPS33B-interacting protein in polarity and apical restriction.	Vacuolar protein sorting-associated protein 11 homolog isoform X1.	0.678
VIPAS39	VPS16	ENSPVIP00000001114	ENSPVIP00000008954	VPS33B-interacting protein in polarity and apical restriction.	VPS16 core subunit of CORVET and HOPS complexes.	0.915
VIPAS39	VPS18	ENSPVIP00000001114	ENSPVIP00000026241	VPS33B-interacting protein in polarity and apical restriction.	Vacuolar protein sorting-associated protein 18 homolog.	0.681
VIPAS39	VPS33A	ENSPVIP00000001114	ENSPVIP00000016546	VPS33B-interacting protein in polarity and apical restriction.	Vacuolar protein sorting-associated protein 33A.	0.941
VIPAS39	VPS33B	ENSPVIP00000001114	ENSPVIP00000014360	VPS33B-interacting protein in polarity and apical restriction.	Vacuolar protein sorting-associated protein 33B isoform X1.	0.987
VIPAS39	VPS39	ENSPVIP00000001114	ENSPVIP00000025927	VPS33B-interacting protein in polarity and apical restriction.	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	0.685
VIPAS39	VPS45	ENSPVIP00000001114	ENSPVIP00000027011	VPS33B-interacting protein in polarity and apical restriction.	Vacuolar protein sorting-associated protein 45 isoform X1.	0.616
VIPAS39	XPNPEP1	ENSPVIP00000001114	ENSPVIP00000012917	VPS33B-interacting protein in polarity and apical restriction.	Xaa-Pro aminopeptidase 1 isoform X1.	0.674
VPS11	ENSPVIP00000005662	ENSPVIP00000012268	ENSPVIP00000005662	Vacuolar protein sorting-associated protein 11 homolog isoform X1.	annotation not available	0.974