STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RO6060 kDa SS-A/Ro ribonucleoprotein isoform X1. (536 aa)    
Predicted Functional Partners:
SSB
Lupus La protein.
    
 
 0.754
RNASET2
Ribonuclease T2.
      
 0.679
XPOT
Exportin-T isoform X1.
      
 0.557
SNRPC
U1 small nuclear ribonucleoprotein C.
      
 0.557
CDT1
Chromatin licensing and DNA replication factor 1.
      
 0.457
SNRNP70
U1 small nuclear ribonucleoprotein 70 kDa.
    
 
 0.457
RNASEH2B
Ribonuclease H2 subunit B isoform X1.
      
 0.402
CDA
Cytidine deaminase.
      
 0.400
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.