Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TNRTenascin-R isoform X1. (1356 aa)    
Predicted Functional Partners:
ACAN
Aggrecan core protein isoform X1.
   
 0.950
ITGA9
Integrin alpha 9.
    
 0.948
ITGB6
Integrin beta 6.
   
0.948
ITGA8
Integrin alpha 8.
    
 0.946
ITGAV
Integrin alpha V.
    
 0.946
ITGB3
Integrin subunit beta 3.
   
 0.939
ITGB1
Integrin beta-1 isoform X1.
   
0.939
PTPRZ1
Receptor-type tyrosine-protein phosphatase zeta isoform X1.
   
  0.920
SDC1
Syndecan 1.
     
  0.900
SDC4
Syndecan 4.
     
  0.900
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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