RNF144B protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF144B

LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B. (298 aa)

Predicted Functional Partners:

HSPH1

0.694

SH3BGRL

0.687

RBM43

0.674

RNF216

0.665

FRMD4A

0.662

TMEM150A

0.612

LOC110077785

0.612

RPS27A

0.587

LOC110071729

0.580

RNF223

0.579

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FRMD4A	HSPH1	ENSPVIP00000017573	ENSPVIP00000028279	FERM domain-containing protein 4A isoform X1.	Heat shock protein 105 kDa.	0.443
FRMD4A	LOC110077785	ENSPVIP00000017573	ENSPVIP00000022026	FERM domain-containing protein 4A isoform X1.	Transmembrane protein 150A-like.	0.597
FRMD4A	RNF144B	ENSPVIP00000017573	ENSPVIP00000001231	FERM domain-containing protein 4A isoform X1.	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B.	0.662
FRMD4A	SH3BGRL	ENSPVIP00000017573	ENSPVIP00000010871	FERM domain-containing protein 4A isoform X1.	SH3 domain-binding glutamic acid-rich-like protein.	0.573
FRMD4A	TMEM150A	ENSPVIP00000017573	ENSPVIP00000021286	FERM domain-containing protein 4A isoform X1.	Transmembrane protein 150A.	0.597
HSPH1	FRMD4A	ENSPVIP00000028279	ENSPVIP00000017573	Heat shock protein 105 kDa.	FERM domain-containing protein 4A isoform X1.	0.443
HSPH1	LOC110077785	ENSPVIP00000028279	ENSPVIP00000022026	Heat shock protein 105 kDa.	Transmembrane protein 150A-like.	0.616
HSPH1	RNF144B	ENSPVIP00000028279	ENSPVIP00000001231	Heat shock protein 105 kDa.	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B.	0.694
HSPH1	SH3BGRL	ENSPVIP00000028279	ENSPVIP00000010871	Heat shock protein 105 kDa.	SH3 domain-binding glutamic acid-rich-like protein.	0.508
HSPH1	TMEM150A	ENSPVIP00000028279	ENSPVIP00000021286	Heat shock protein 105 kDa.	Transmembrane protein 150A.	0.616
LOC110071729	RNF144B	ENSPVIP00000006070	ENSPVIP00000001231	Ubiquitin-conjugating enzyme E2 L3-like.	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B.	0.580
LOC110071729	RNF216	ENSPVIP00000006070	ENSPVIP00000006859	Ubiquitin-conjugating enzyme E2 L3-like.	E3 ubiquitin-protein ligase RNF216 isoform X1.	0.781
LOC110071729	RPS27A	ENSPVIP00000006070	ENSPVIP00000022123	Ubiquitin-conjugating enzyme E2 L3-like.	Ribosomal protein S27a.	0.946
LOC110077785	FRMD4A	ENSPVIP00000022026	ENSPVIP00000017573	Transmembrane protein 150A-like.	FERM domain-containing protein 4A isoform X1.	0.597
LOC110077785	HSPH1	ENSPVIP00000022026	ENSPVIP00000028279	Transmembrane protein 150A-like.	Heat shock protein 105 kDa.	0.616
LOC110077785	RNF144B	ENSPVIP00000022026	ENSPVIP00000001231	Transmembrane protein 150A-like.	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B.	0.612
LOC110077785	SH3BGRL	ENSPVIP00000022026	ENSPVIP00000010871	Transmembrane protein 150A-like.	SH3 domain-binding glutamic acid-rich-like protein.	0.606
RBM43	RNF144B	ENSPVIP00000006512	ENSPVIP00000001231	RNA-binding protein 43 isoform X1.	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B.	0.674
RNF144B	FRMD4A	ENSPVIP00000001231	ENSPVIP00000017573	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B.	FERM domain-containing protein 4A isoform X1.	0.662
RNF144B	HSPH1	ENSPVIP00000001231	ENSPVIP00000028279	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF144B.	Heat shock protein 105 kDa.	0.694