STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM25E3 ubiquitin/ISG15 ligase TRIM25 isoform X1. (705 aa)    
Predicted Functional Partners:
DDX58
Probable ATP-dependent RNA helicase DDX58 isoform X1.
   
  0.915
RPS27A
Ribosomal protein S27a.
    
  0.581
ISG15
ISG15 ubiquitin like modifier.
   
 0.581
UBE2N
Ubiquitin-conjugating enzyme E2 N isoform X1.
   
 0.569
IFIH1
Interferon-induced helicase C domain-containing protein 1 isoform X1.
   
 0.547
UBC
Polyubiquitin-C.
   
 0.532
LOC110072527
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.448
LOC110072526
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.448
IRF3
Interferon regulatory factor 3.
   
 0.424
DHX58
Probable ATP-dependent RNA helicase DHX58.
   
 0.414
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.