Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS25Vacuolar protein-sorting-associated protein 25. (176 aa)    
Predicted Functional Partners:
VPS36
Vacuolar protein-sorting-associated protein 36 isoform X1.
   
 0.999
SNF8
ESCRT-II complex subunit VPS22.
   
 0.999
CHMP6
Charged multivesicular body protein 6 isoform X1.
   
 0.997
VPS28
Vacuolar protein sorting-associated protein 28 homolog.
   
 0.993
TSG101
Tumor susceptibility gene 101 protein isoform X1.
   
 0.980
VPS37A
Vacuolar protein sorting-associated protein 37A isoform X1.
    
 0.974
VPS37B
Vacuolar protein sorting-associated protein 37B.
    
 0.967
ENSPVIP00000000370
annotation not available
   
 0.921
CHMP2A
Charged multivesicular body protein 2A.
   
 0.921
CHMP4B
Charged multivesicular body protein 4b.
    
 0.911
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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