STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM5PR/SET domain 5. (580 aa)    
Predicted Functional Partners:
UROS
Uroporphyrinogen-III synthase isoform X1.
      
 0.747
PDE6D
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta.
    
 
 0.682
ADAM23
Disintegrin and metalloproteinase domain-containing protein 23 isoform X1.
     
 0.594
ZNF644
Zinc finger protein 644 isoform X1.
    
 
 0.575
MLF1
Myeloid leukemia factor 1 isoform X1.
    
 
 0.565
SH3RF3
SH3 domain-containing RING finger protein 3 isoform X1.
    
 0.562
HAPLN1
Hyaluronan and proteoglycan link protein 1.
    
 0.535
PCOLCE2
Procollagen C-endopeptidase enhancer 2.
      
 0.522
PRDM8
PR/SET domain 8.
    
 
 0.521
ENSPVIP00000020409
annotation not available
    
  0.498
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.