Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DTD1D-tyrosyl-tRNA(Tyr) deacylase 1 isoform X1. (209 aa)    
Predicted Functional Partners:
PPP6C
Serine/threonine-protein phosphatase 6 catalytic subunit.
   
   0.750
YARS1
Tyrosine--tRNA ligase, cytoplasmic.
  
 
 0.633
DTD2
Probable D-tyrosyl-tRNA(Tyr) deacylase 2 isoform X1.
      
 0.569
YARS2
Tyrosine--tRNA ligase, mitochondrial.
     
 0.479
APPL2
DCC-interacting protein 13-beta.
      
 0.433
APPL1
DCC-interacting protein 13 alpha.
      
 0.433
N6AMT1
Release factor glutamine methyltransferase.
  
  
 0.432
DDX43
Probable ATP-dependent RNA helicase DDX43 isoform X1.
    
 
 0.430
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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