Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DDX27Probable ATP-dependent RNA helicase DDX27. (713 aa)    
Predicted Functional Partners:
PES1
Pescadillo homolog.
   
 0.992
NOC2L
Nucleolar complex protein 2 homolog.
   
 
 0.991
RBM28
RNA-binding protein 28.
   
 0.990
DDX54
ATP-dependent RNA helicase DDX54/DBP10.
  
 
0.985
NIFK
MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.985
RBM34
RNA-binding protein 34.
   
  0.983
DDX18
ATP-dependent RNA helicase DDX18/HAS1.
  
 
0.982
RPF2
Ribosome production factor 2 homolog isoform X1.
   
 
 0.981
FTSJ3
LOW QUALITY PROTEIN: pre-rRNA processing protein FTSJ3.
   
 0.981
GTPBP4
Nucleolar GTP-binding protein 1 isoform X1.
   
 
 0.971
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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