Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX46Probable ATP-dependent RNA helicase DDX46. (1078 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.985
SNRPA1
U2 small nuclear ribonucleoprotein A.
    
 0.982
PHF5A
PHD finger-like domain-containing protein 5A.
    
 0.977
SF3A2
Splicing factor 3A subunit 2.
    
 0.977
SF3A1
Splicing factor 3A subunit 1 isoform X1.
   
 0.975
SF3B3
Splicing factor 3B subunit 3.
   
 0.973
SF3B2
Splicing factor 3b subunit 2.
   
 0.971
SF3A3
Splicing factor 3a subunit 3.
   
 0.971
SF3B5
Splicing factor 3B subunit 5 isoform X1.
    
 0.962
SF3B4
Splicing factor 3B subunit 4.
    
 0.959
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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