STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HACE1HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1. (886 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12.
   
 
0.819
UBC
Polyubiquitin-C.
   
 0.781
LOC110072527
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.677
LOC110072526
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.677
UBE2L3
Ubiquitin-conjugating enzyme E2 L3.
    
 0.677
RPS27A
Ribosomal protein S27a.
   
 0.676
FAU
Ubiquitin-like protein fubi and ribosomal protein S30.
   
 0.644
KIAA1324
UPF0577 protein KIAA1324 homolog isoform X1.
    
 
 0.600
MCL1
Induced myeloid leukemia cell differentiation protein Mcl-1.
    
 
 0.567
ALYREF
THO complex subunit 4.
    
 
 0.560
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.