STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRRT1Proline rich transmembrane protein 1. (260 aa)    
Predicted Functional Partners:
GRIA1
Glutamate receptor 1 isoform X1.
    
 
 0.803
CACNG8
Voltage-dependent calcium channel gamma-8 subunit.
    
 0.690
CNIH3
Protein cornichon homolog 3 isoform X1.
    
 
 0.667
ENSPVIP00000026702
annotation not available
    
 
 0.667
FAM241B
Uncharacterized protein C10orf35 homolog.
    
   0.604
SKIV2L
Ski2 like RNA helicase.
      
 0.566
ENSPVIP00000015622
annotation not available
    
 
 0.507
GRIA2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 
 0.507
LRRTM2
Leucine-rich repeat transmembrane neuronal protein 1/2.
    
 0.455
PRRT3
Proline-rich transmembrane protein 3.
    
 
 0.441
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.