STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USH1GUsher syndrome type-1G protein. (468 aa)    
Predicted Functional Partners:
USH1C
Harmonin isoform X1.
   
 0.997
WHRN
Whirlin.
    
 0.874
PDZD7
PDZ domain-containing protein 7 isoform X1.
    
 0.798
GRXCR2
Glutaredoxin domain-containing cysteine-rich protein 2.
     
 0.782
USH2A
LOW QUALITY PROTEIN: usherin.
    
 0.772
CIB2
Calcium and integrin-binding family member 2 isoform X1.
    
 0.707
CLRN1
Clarin-1 isoform X1.
      
 0.696
CDH23
Cadherin 23.
   
 0.693
CDHR2
Cadherin-related family member 2.
   
 0.693
ENSPVIP00000012180
annotation not available
   
 0.680
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.