Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TAP1ATP-binding cassette, subfamily B (MDR/TAP), member 2. (721 aa)    
Predicted Functional Partners:
LOC110070640
ATP-binding cassette, subfamily B (MDR/TAP), member 3.
  
0.991
TAP2
ATP-binding cassette, subfamily B (MDR/TAP), member 3.
  
0.991
TAPBP
TAP binding protein (tapasin).
   
 0.973
PDIA3
Protein disulfide-isomerase A3.
   
 0.971
LOC110076170
Calreticulin-like.
   
 0.953
CALR
Calreticulin.
   
 0.953
CALR3
Calreticulin-3 isoform X1.
   
 0.934
LOC110071263
Proteasome subunit beta type-9-like.
   
 0.868
PSMB8
Proteasome subunit beta type-8-like.
   
 0.770
RPA2
Replication protein A 32 kDa subunit.
   
 0.678
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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