Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TRUB2Probable tRNA pseudouridine synthase 2 isoform X1. (325 aa)    
Predicted Functional Partners:
FASTKD2
FAST kinase domain-containing protein 2, mitochondrial.
   
 0.971
RCC1L
RCC1-like G exchanging factor-like protein.
    
 0.950
YARS2
Tyrosine--tRNA ligase, mitochondrial.
  
 
 0.931
DDX28
Probable ATP-dependent RNA helicase DDX28.
  
 
 0.929
MTERF3
Transcription termination factor 3, mitochondrial isoform X1.
   
 0.909
LOC110071735
Pseudouridylate synthase 7 homolog-like protein.
   
  
 0.877
NOP58
Nucleolar protein 58 isoform X1.
  
 
 0.852
PUSL1
Pseudouridine synthase like 1.
   
 0.841
NOP56
Nucleolar protein 56.
   
 
 0.837
GAR1
H/ACA ribonucleoprotein complex subunit 1.
   
 0.811
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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